DNA Binding Motif
| Accessions: | UP00361A_2 (UniPROBE 20160601), UP00384A_5 (UniPROBE 20160601) |
| Names: | HLH-2_HLH-15 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | rrmsCAsCTGbGccmt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.32 0.16 0.35 0.16 r 02 0.26 0.22 0.34 0.19 r 03 0.46 0.41 0.06 0.07 m 04 0.21 0.39 0.34 0.06 s 05 0.02 0.95 0.01 0.02 C 06 0.94 0.01 0.01 0.04 A 07 0 0.38 0.55 0.07 s 08 0.06 0.79 0.14 0.01 C 09 0.01 0.01 0.01 0.96 T 10 0.01 0.01 0.95 0.02 G 11 0.06 0.26 0.42 0.25 b 12 0.09 0.03 0.72 0.16 G 13 0.14 0.41 0.24 0.21 c 14 0.17 0.55 0.13 0.15 c 15 0.30 0.50 0.13 0.07 m 16 0.07 0.12 0.20 0.61 t |
| Type: | Heterodimer |
| Binding TFs: | UP00361A (Helix-loop-helix DNA-binding domain) UP00384A (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | AACACCTG AACAGCTG ACACCTGC ACACCTGT ACAGCTGC ACAGCTGG ACAGCTGT ACCACCTG ACCAGCTG AGCAGCTG AGCAGGTG CACAGCTG CACAGGTG CACCTGCG CAGCTGCG CAGGTGCG CCACCTGC GCAGCTGC CAGCTGGG CCAGCTGG |
| Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] |
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