DNA Binding Motif
| Accessions: | UP00369A_1 (UniPROBE 20160601) |
| Names: | Achaete-scute/HLH, HLH-4, T05G5.2 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | mawwaawaAaadgw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.39 0.31 0.09 0.22 m 02 0.40 0.24 0.13 0.24 a 03 0.47 0.11 0.14 0.29 w 04 0.47 0.11 0.14 0.29 w 05 0.60 0.13 0.20 0.08 a 06 0.63 0.09 0.07 0.21 a 07 0.58 0.08 0.09 0.25 w 08 0.64 0.07 0.17 0.12 a 09 0.68 0.14 0.08 0.09 A 10 0.51 0.23 0.17 0.10 a 11 0.50 0.20 0.11 0.19 a 12 0.30 0.10 0.32 0.28 d 13 0.14 0.04 0.58 0.25 g 14 0.35 0.13 0.24 0.28 w |
| Binding TFs: | UP00369A (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | AACACCTG AACAGGTG ACACCTGC ACACCTGT ACAGGTGA ACAGGTGC ACCACCTG AGCAGGTG ATCACCTG CACCTGCA CACCTGCC CACCTGCG CACCTGTC CAGGTGCA CCACCTGC GCACCTGC CAGGTGAA CAGGTGGA CAGGTGTA GCAGGTGA |
| Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] |
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