DNA Binding Motif
| Accessions: | UP00378A_1 (UniPROBE 20160601) |
| Names: | HLH-19 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 14 |
| Consensus: | ctwwramwwwmmaw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.20 0.34 0.22 0.24 c 02 0.16 0.23 0.22 0.38 t 03 0.27 0.13 0.21 0.39 w 04 0.47 0.09 0.18 0.27 w 05 0.44 0.09 0.30 0.17 r 06 0.51 0.17 0.13 0.18 a 07 0.40 0.28 0.16 0.16 m 08 0.50 0.06 0.15 0.29 w 09 0.54 0.09 0.06 0.31 w 10 0.38 0.15 0.15 0.32 w 11 0.40 0.32 0.06 0.21 m 12 0.34 0.38 0.10 0.18 m 13 0.62 0.12 0.08 0.17 a 14 0.35 0.23 0.06 0.36 w |
| Binding TFs: | UP00378A (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | AAAATTTT AACACCTG AACAGCTG AACAGGTG AACATATG ACACCTGT ACAGCTGC ACAGCTGG ACAGCTGT ACCACCTG ACCAGCTG CAGCTGTC AACATCTG ACAGGTGG ACATATGG ACATCTGG CAGCTGGG CCAGATGG CCAGCTGG CCATATGG |
| Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] |
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