DNA Binding Motif
| Accessions: | UP00548D_1 (UniPROBE 20160601) |
| Names: | Helix Loop Helix Protein 1, HLH-1_L13V, MyoD1 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 23 |
| Consensus: | mrkrkrkRACAGcTGTymgrkmm |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.45 0.38 0.06 0.11 m 02 0.31 0.19 0.32 0.17 r 03 0.17 0.14 0.31 0.38 k 04 0.31 0.18 0.28 0.22 r 05 0.21 0.18 0.25 0.36 k 06 0.32 0.14 0.37 0.17 r 07 0.20 0.13 0.42 0.25 k 08 0.71 0.02 0.26 0 R 09 0.85 0.02 0.13 0.01 A 10 0 0.99 0 0 C 11 0.99 0 0 0.01 A 12 0.01 0.03 0.92 0.05 G 13 0.11 0.63 0.24 0.01 c 14 0 0.01 0 0.98 T 15 0 0 0.99 0 G 16 0.02 0.12 0.04 0.82 T 17 0.02 0.43 0.04 0.51 y 18 0.25 0.43 0.17 0.15 m 19 0.20 0.18 0.40 0.22 g 20 0.35 0.23 0.27 0.15 r 21 0.21 0.22 0.25 0.32 k 22 0.38 0.26 0.13 0.22 m 23 0.61 0.29 0.03 0.07 m |
| Binding TFs: | UP00548D (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | AACACCTG AACAGCTG AACAGGTG ACACCTGC ACACCTGT ACAGCTGC ACAGCTGT ACAGGTGA ACAGGTGC AGCAGCTG AGCAGGTG CACCTGAC CACCTGTC CAGCTGAC CAGCTGTC CAGGTGAC ACAGATGT ACATATGT CAGGTGTC CATCTGTC |
| Publications: | De Masi F, Grove CA, Vedenko A, Alibés A, Gisselbrecht SS, Serrano L, Bulyk ML, Walhout AJ. Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinants. Nucleic Acids Res 39:4553-63 (2011). [Pubmed] |
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