DNA Binding Motif
| Accessions: | UP00548A_1 (UniPROBE 20160601), UP00548B_1 (UniPROBE 20160601) |
| Names: | Helix Loop Helix Protein 1, HLH-1, MyoD1, HLH-1_L13R |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 23 |
| Consensus: | sGgamrGrCACGTGtCsyhCysy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.19 0.36 0.33 0.13 s 02 0.07 0.10 0.68 0.15 G 03 0.14 0.14 0.53 0.19 g 04 0.67 0.11 0.11 0.11 a 05 0.29 0.37 0.21 0.13 m 06 0.25 0.17 0.36 0.22 r 07 0.09 0.04 0.87 0.01 G 08 0.43 0.08 0.45 0.05 r 09 0.01 0.98 0 0.01 C 10 0.97 0 0.01 0.02 A 11 0 0.91 0 0.09 C 12 0.09 0 0.91 0 G 13 0.02 0.01 0 0.97 T 14 0.01 0 0.98 0.01 G 15 0.10 0.19 0.14 0.56 t 16 0.01 0.87 0.04 0.09 C 17 0.22 0.35 0.28 0.15 s 18 0.10 0.46 0.16 0.27 y 19 0.26 0.34 0.06 0.34 h 20 0.07 0.71 0.05 0.18 C 21 0.16 0.45 0.13 0.26 y 22 0.12 0.28 0.44 0.17 s 23 0.18 0.38 0.17 0.26 y |
| Type: | Heterodimer |
| Binding TFs: | UP00548A (Helix-loop-helix DNA-binding domain) UP00548B (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | AACACCTG AACACGTG AACAGCTG AACAGGTG AACAGTTG ACAACTGT ACACCTGC ACACCTGT ACACGTGA ACACGTGC ACACGTGG ACACGTGT ACAGCTGC ACAGCTGT ACAGGCGC ACAGGTGC ACCACGTG AGCACGTG AGCAGCTG AGCAGGTG ATCACGTG CAACTGTC CACACGTG CACCTGTC CACGTGAC CACGTGCA CACGTGCC CACGTGCG CACGTGGC CACGTGGG CACGTGTA CACGTGTC CAGCTGAC CAGCTGTC CCACGTGC GCACGTGA GCACGTGC GCAGCTGC AACAGGCG ACAGTTGC |
| Publications: | De Masi F, Grove CA, Vedenko A, Alibés A, Gisselbrecht SS, Serrano L, Bulyk ML, Walhout AJ. Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinants. Nucleic Acids Res 39:4553-63 (2011). [Pubmed] |
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