DNA Binding Site
| Accessions: | GCACTTGA (UniPROBE 20160601), MA2301.1.2 (JASPAR 2024) |
| Organisms: | Mus musculus, Caenorhabditis elegans, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | GCACTTGA |
| Type: | Heterodimer |
| Binding TFs: | UP00107A (Homeobox domain) UP00119A (Homeobox domain) UP00147A (Homeobox domain) UP00165A (Homeobox domain) UP00190A (Homeobox domain) UP00231A (Homeobox domain) UP00249A (Homeobox domain) UP00396A (Homeobox domain) UP00511A (Homeobox domain) UP00604C (Homeobox domain) UP00605A (Homeobox domain) UP00605B (Homeobox domain) O61735 |
| Binding Motifs: | UP00107A_1 waarCCACTTrAmwty UP00119A_1 wttwrAGTACTyrAaty UP00147A_1 trAkCCACTTrAvwtt UP00165A_1 yaAgCCACTTgAmhtt UP00190A_1 yyTtAAGYRCTTaatg UP00231A_1 hwarCCACTTGArawtw UP00249A_1 hrakCCACTTrAawty UP00396A_1 / UP00396A_2 tsdywrrCCACTTsAmawtwmk UP00511A_1 aagrcwtawCCACTTAwrwwymA UP00604C_1 mwawtwwAAGYRCTTAAawyyw UP00605A_1 twwrrrdCCACTyGAvwtysks UP00605B_1 twtrrrkCCACTygAvwtygks MA2301.1 tCACGTGa |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] Zhu LJ, Christensen RG, Kazemian M, Hull CJ, Enuameh MS, Basciotta MD, Brasefield JA, Zhu C, Asriyan Y, Lapointe DS, Sinha S, Wolfe SA, Brodsky MH. FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system. Nucleic Acids Res : (2011). [Pubmed] |
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