DNA Binding Motif

						

			
Accessions: UP00119A_1 (UniPROBE 20160601)

			
Names: Homeobox protein NK-2 homolog H, Homeobox protein Nkx-2.8, Homeobox protein Nkx-2.9, locus 9 (Drosophila), NK2 transcription factor related, Nkx2-8, Nkx2-9, Nkx2.9, Nkx2h, tinman
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: wttwrAGTACTyrAaty
Weblogo: 
PSSM: P0      A      C      G      T
01   0.25   0.08   0.16   0.51      w
02   0.15   0.20   0.12   0.53      t
03   0.23   0.15   0.07   0.54      t
04   0.32   0.10   0.24   0.34      w
05   0.67      0   0.31   0.02      r
06   0.87   0.01   0.09   0.03      A
07   0.01   0.03   0.96   0.01      G
08      0   0.22      0   0.77      T
09   0.77      0   0.22      0      A
10   0.01   0.96   0.03   0.01      C
11   0.03   0.09   0.01   0.87      T
12   0.02   0.31      0   0.67      y
13   0.41   0.17   0.25   0.16      r
14   0.79   0.02   0.05   0.13      A
15   0.59   0.12   0.10   0.18      a
16   0.24   0.12   0.21   0.43      t
17   0.15   0.36   0.13   0.37      y
Binding TFs: UP00119A (Homeobox domain)
Binding Sites: AAGTACTC
ACCACTTA
AGCACTTA
ATAAGTGC
ATAAGTGG
CACTTAAA
CACTTAAG
CACTTATC
CACTTGAA
CACTTGAG
CCACTCAA
CCACTTAA
CCACTTCA
CCACTTGA
GAGTACTC
GCACTTAA
GCACTTCA
GCACTTGA
GTACTTCA
GTACTTGA
			
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.