DNA Binding Site

						

			
Accessions: ATTATAAT (UniPROBE 20160601)

			
Organisms: Mus musculus, Caenorhabditis elegans, Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: ATTATAAT
Type: Heterodimer
Binding TFs: UP00004A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00016A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00051A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00064A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00071A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00075A (HMG (high mobility group) box, Domain of unknown function (DUF1898))
UP00105A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00244A (Homeobox domain)
UP00357A (Helix-loop-helix DNA-binding domain)
UP00387A (Helix-loop-helix DNA-binding domain)
UP00604D (Homeobox domain)
UP00604E (Homeobox domain)
UP00610B (Homeobox domain, 'Paired box' domain)
UP00616A (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00616B (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00616C (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00616D (Homeobox domain, Pou domain - N-terminal to homeobox domain)
UP00626B (Homeobox domain)
Binding Motifs: UP00004A_1 khtaATTATAATwwdm
UP00016A_1 khkwATTATAATrwtm
UP00051A_1 kkatywATTGTTmwkwa
UP00064A_1 twyhATTGTTbtmamw
UP00071A_1 hwtwATTATAATwdwk
UP00075A_1 wrkwgAACAATwrrtwt
UP00105A_1 rmttAATTAATTAadtc
UP00244A_1 kwatyAATTAATaayww
UP00357A_1 whyrATCAGCTGatsk
UP00387A_1 ksrACAGCTGTyrwrr
UP00004A_2 ykyasACAATrgmks
UP00016A_2 yydmdraACAATrrryg
UP00051A_2 acATTCAtgamass
UP00064A_2 gkrsyraATtyrwdhm
UP00075A_2 btramTGwmATtysr
UP00071A_2 vvycwATTGTtcckhkr
UP00604D_1 amaTtawatavrtatwywaTwa
UP00604E_1 tawwywATrTwwATtAwytaAA
UP00610B_1 twwwkcbkttTAATTAasmasgk
UP00616A_1 ykwrytwATTATGCAkaywkhm
UP00616B_1 hkwrythATTATGCRgayakhm
UP00616C_1 kgacgyyyTAATTArwcrtcrr
UP00616D_1 tkwryyhATTATGCrkryakhm
UP00626B_1 ygwwwhwttTwATATagwaawaw
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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