Transcription Factor
| Accessions: | UP00075A (UniPROBE 20160601) |
| Names: | Sox-15, SOX-15 protein, Sox15, SRY-box containing gene 15 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P43267 |
| Description: | SRY-box containing gene 15 |
| Length: | 101 |
| Pfam Domains: | 16-78 Domain of unknown function (DUF1898) 17-85 HMG (high mobility group) box |
| Sequence: (in bold interface residues) | 1 EAGGSPGASGGLPLEKVKRPMNAFMVWSSVQRRQMAQQNPKMHNSEISKRLGAQWKLLGD 60 61 EEKRPFVEEAKRLRARHLRDYPDYKYRPRRKSKNSSTGSVP |
| Interface Residues: | 19, 22, 24, 25, 26, 28, 32, 43, 44, 45, 48, 86, 90 |
| 3D-footprint Homologues: | 4s2q_D, 1qrv_A, 3tmm_A, 4y60_C, 2gzk_A, 1j5n_A, 6jrp_D, 2lef_A, 3u2b_C, 1o4x_B, 7m5w_A, 3f27_D, 1hry_A, 3tq6_B, 1ckt_A |
| Binding Motifs: | UP00075A_1 wrkwgAACAATwrrtwt UP00075A_2 btramTGwmATtysr |
| Binding Sites: | ATTATAAT AAACAAAG AACAAAAG AACAAAGG AACAATAA AACAATAG AACAATTA AAGACAAT AATTCAAT AATTGTTC ACAATAGA ACAATTAA AGAACAAT AGACAATA ATTGTTAA ATTGTTTC CATTAATA CATTGTTA GAACAATA TAACAATA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.