DNA Binding Site
| Accessions: | ACACGGCA (UniPROBE 20160601), MA2018.2.10 (JASPAR 2024) |
| Organisms: | Saccharomyces cerevisiae, Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | ACACGGCA |
| Type: | Heterodimer |
| Binding TFs: | UP00468A (Zinc finger, C2H2 type) Q9M126 (No apical meristem (NAM) protein) UP00570A (No apical meristem (NAM) protein) UP00571A (No apical meristem (NAM) protein) UP00572A (No apical meristem (NAM) protein) UP00573A (No apical meristem (NAM) protein) UP00576A (No apical meristem (NAM) protein) UP00579A (No apical meristem (NAM) protein) UP00580A (No apical meristem (NAM) protein) Q9M126 |
| Binding Motifs: | UP00468A_1 tcatatmGyGCCGYryscabrwb UP00570A_1 tACACGbmACyk UP00570A_2 maCACGsmActt UP00571A_1 vyaCACGgmAcyr UP00571A_2 skwYACGGmAcTt UP00572A_1 myACACGCAAycd UP00572A_2 htACACGCAAcck UP00572A_3 cwACACGCAACC UP00572A_4 wtACACGCAACck UP00573A_1 raAGAGmCGTAt UP00573A_2 rAGAGaCGTGyk UP00576A_1 stACACGCAAcC UP00576A_2 gggTAAGkAAwht UP00579A_1 wrCACGGmACyt UP00579A_2 gtACACGsAACy UP00580A_1 waCACGymACyb UP00580A_2 rkACACGsAACy MA2018.2 ACAAGGCA |
| Publications: | Gordân R, Murphy KF, McCord RP, Zhu C, Vedenko A, Bulyk ML. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol : (2011). [Pubmed] Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
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