Transcription Factor
| Accessions: | T18777 (AthalianaCistrome v4_May2016), Q9M126 (JASPAR 2024) |
| Names: | AT4G01550, NTM2, T18777;, ANAC069, NAC domain-containing protein 69, NAC69_ARATH, Protein NAC WITH TRANSMEMBRANE MOTIF 2, Protein NTM1-like 13 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:NAC |
| Length: | 457 |
| Pfam Domains: | 6-135 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MVKDLVGYRFYPTGEELINHYLKNKILGKTWLVDEAISEINICSYDPIYLPSLSKIKSDD 60 61 PVWYFFCPKEYTSAKKKVTKRTTSSGYWKATGVDRKIKDKRGNRGEIGIKKTLVYYEGRV 120 121 PKGVWTPWVMHEYHITCLPQDQRNYVICQVMYKGEDGDVPSGGNNSSEPSQSLVSDSNTV 180 181 RATSPTALEFEKPGQENFFGMSVDDLGTPKNEQEDFSLWDVLDPDMLFSDNNNPTVHPQA 240 241 PHLTPNDDEFLGGLRHVNREQVEYLFANEDFISRPTLSMTENRNDHRPKKALSGIIVDYS 300 301 SDSNSDAESISATSYQGTSSPGDDSVGSSNRQFLQTGGDEILSSCNDLQTYGEPSISSST 360 361 RQSQLTRSIIRPKQEVKQDTSRAVDSDTSIDKESSMVKTEKKSWFITEEAMERNRNNPRY 420 421 IYLMRMIIGFILLLALISNIISVLQNLNPAMKFDRER |
| Interface Residues: | 73, 78, 89, 91, 93, 116, 121, 122 |
| 3D-footprint Homologues: | 7xp3_B |
| Binding Motifs: | M0677 wmCTTsTtyaayAAG MA2018.1 wmACAAGGCAwh MA2018.2 ACAAGGCA |
| Binding Sites: | MA2018.2.10 MA2018.1.1 MA2018.1.10 MA2018.1.11 MA2018.1.12 MA2018.1.13 MA2018.1.14 MA2018.1.15 MA2018.1.16 MA2018.1.17 MA2018.1.18 MA2018.1.19 MA2018.1.2 MA2018.1.20 MA2018.1.3 MA2018.1.4 MA2018.1.5 MA2018.1.6 MA2018.1.7 MA2018.1.8 MA2018.1.9 MA2018.2.1 / MA2018.2.13 / MA2018.2.14 / MA2018.2.16 / MA2018.2.5 / MA2018.2.6 MA2018.2.11 / MA2018.2.20 MA2018.2.12 MA2018.2.15 / MA2018.2.7 MA2018.2.17 / MA2018.2.2 / MA2018.2.9 MA2018.2.18 MA2018.2.19 MA2018.2.3 MA2018.2.4 MA2018.2.8 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.