Transcription Factor
| Accessions: | UP00580A (UniPROBE 20160601) |
| Names: | ANAC030, Arabidopsis NAC domain containing protein 30, ARABIDOPSIS NAC-DOMAIN PROTEIN 030, F17M19_8, F17M19.8, vascular related NAC-domain protein 7, VND7 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | vascular related NAC-domain protein 7: Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (e.g. genes involved in secondary wall biosynthesis, cell wall modification such as xylan accumulation, and programmed cell death). Involved in xylem formation in roots and shoots, especially regulating pro |
| Length: | 163 |
| Pfam Domains: | 9-137 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MDNIMQSSMPPGFRFHPTEEELVGYYLDRKINSMKSALDVIVEIDLYKMEPWDIQARCKL 60 61 GYEEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNSVIGMRKTLVYYKG 120 121 RAPNGRKSDWIMHEYRLQNSELAPVQEEGWVVCRAFRKPIPNQ |
| Interface Residues: | 8, 9, 10, 11, 13, 14, 78, 83, 85, 94, 96, 98, 118, 122, 123, 124, 127 |
| 3D-footprint Homologues: | 7amn_A, 7xp3_B, 3swp_A |
| Binding Motifs: | UP00580A_1 waCACGymACyb UP00580A_2 rkACACGsAACy |
| Binding Sites: | CACGGCAC GTGCCGTA GTTACGTA TTACGCAA TTACGTAA ACACGCAA ACACGGAA ACACGGCA ACACGTAA ACACGTCA ACGCAACT ACGGCACT ACGTAACT CACGCAAC CACGGAAC CACGTAAC GCACGGCA GTTCCGTA GTTGCGTA TGCCGTAA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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