Transcription Factor
| Accessions: | UP00572A (UniPROBE 20160601) |
| Names: | ANAC092, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6, Arabidopsis NAC domain containing protein 92, ATNAC2, MIJ24_11, MIJ24.11, NAC-domain transcription factor, NAC6, ORE1, ORESARA 1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | NAC-domain transcription factor: Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[ACG][CA]GT[AG](5-6n)[CT]AC[AG]-3' (PubMed:23340744). Promotes lateral root development (PubMed:16359384). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with sal |
| Length: | 176 |
| Pfam Domains: | 20-146 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MDYEASRIVEMVEDEEHIDLPPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVDLNKI 60 61 EPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMK 120 121 KTLVFYKGRAPKGVKTNWVMHEYRLEGKYCIENLPQTAKNEWVICRVFQKRADGTK |
| Interface Residues: | 86, 91, 93, 102, 104, 106, 126, 130, 131, 132, 135 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | UP00572A_1 myACACGCAAycd UP00572A_2 htACACGCAAcck UP00572A_3 cwACACGCAACC UP00572A_4 wtACACGCAACck |
| Binding Sites: | CACGCCAC TTACGCAA ACACGCAA ACACGCCA ACACGCTA ACACGGCA ACACGTAA ACACGTCA ACACGTTA ACGCAACC ACGCAATC ATACGCAA ATTGCGTA ATTGCGTG CACGCAAA CACGCAAC GCACGCAA GTACGCAA GTTGCGTA TCACGCAA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.