Transcription Factor
| Accessions: | UP00570A (UniPROBE 20160601) |
| Names: | Abscicic-acid-responsive NAC, ANAC019, Arabidopsis NAC domain containing protein 19, At1g52890, F14G24_16, F14G24.16, NAC domain-containing protein 19 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | NAC domain-containing protein 19: Transcription factors that bind specifically to the 5'-CATGTG-3' motif |
| Length: | 168 |
| Pfam Domains: | 14-139 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLP 60 61 NKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFY 120 121 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK |
| Interface Residues: | 80, 85, 87, 96, 98, 100, 120, 124, 125, 126, 129 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | UP00570A_1 tACACGbmACyk UP00570A_2 maCACGsmActt |
| Binding Sites: | ATTCCGTG CACGGCAC GTGCCGTA GTTACGTA ACACGCAA ACACGGAA ACACGGCA ACACGTAA ACACGTCA ACGGAACT ACGGCACT ACGTAACT CACGCAAC CACGGAAC CACGTAAC CGTGCACG GCACGGCA GCACGTAA GTTCCGTA TCACGGAA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.