Transcription Factor
| Accessions: | UP00571A (UniPROBE 20160601) |
| Names: | ANAC055, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3, ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55, At3g15500, ATAF-like NAC-domain transcription factor, AtNAC3, MJK13.16, NAC domain-containing protein 3, NAC domain-containing protein 55, NAC-DOMAIN ENCODING GENE |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | ATAF-like NAC-domain transcription factor: Transcription factors that bind specifically to the 5'-CATGTG-3' motif |
| Length: | 171 |
| Pfam Domains: | 14-139 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MGLQELDPLAQLSLPPGFRFYPTDEELMVEYLCRKAAGHDFSLQLIAEIDLYKFDPWVLP 60 61 SKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGRRVGIKKALVFY 120 121 IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQTSAQKQAY |
| Interface Residues: | 13, 14, 15, 16, 18, 19, 80, 85, 87, 96, 98, 100, 120, 124, 125, 126, 129 |
| 3D-footprint Homologues: | 7amn_A, 7xp3_B, 3swp_A |
| Binding Motifs: | UP00571A_1 vyaCACGgmAcyr UP00571A_2 skwYACGGmAcTt |
| Binding Sites: | ACGGAACC ATACGTAA ATTCCGTG CACGGCAC GTTACGTA TTACGTAA AACGAGAA ACACGCAA ACACGGAA ACACGGCA ACACGTAA ACGAGAAA ACGGAACA CACGCAAC CACGGAAC CACGTAAC GCACGGAA GCACGGCA GTTCCGTA TACGAGAA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.