DNA Binding Motif
| Accessions: | UP00579A_1 (UniPROBE 20160601) |
| Names: | ANAC105, Arabidopsis NAC domain containing protein 105, K1L20_8, K1L20.8, NAC domain containing protein, VASCULAR-RELATED NAC-DOMAIN 3, VND3 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 12 |
| Consensus: | wrCACGGmACyt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.38 0.19 0.18 0.25 w 02 0.28 0.09 0.42 0.20 r 03 0.01 0.90 0 0.09 C 04 0.98 0.01 0 0.01 A 05 0.01 0.98 0 0 C 06 0.01 0 0.98 0.01 G 07 0.06 0.01 0.86 0.07 G 08 0.39 0.60 0 0 m 09 0.93 0 0.01 0.06 A 10 0.08 0.80 0.03 0.10 C 11 0.16 0.25 0.12 0.47 y 12 0.20 0.22 0.23 0.35 t |
| Binding TFs: | UP00579A (No apical meristem (NAM) protein) |
| Binding Sites: | ACGGAACC ATACGTAA ATTCCGTG CACGGCAC GTTACGTA TTACGTAA ACACGCAA ACACGGAA ACACGGCA ACACGTAA ACACGTCA ACGCAACT ACGGCACT ACGTAACT CACGCAAC CACGGAAC CACGTAAC GCACGGAA GCACGGCA GTTCCGTA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
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