Transcription Factor
| Accessions: | UP00579A (UniPROBE 20160601) |
| Names: | ANAC105, Arabidopsis NAC domain containing protein 105, K1L20_8, K1L20.8, NAC domain containing protein, VASCULAR-RELATED NAC-DOMAIN 3, VND3 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | NAC domain containing protein: Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, ge |
| Length: | 165 |
| Pfam Domains: | 13-139 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MMKVDQDYSCSIPPGFRFHPTDEELVGYYLKKKIASQRIDLDVIREIDLYKIEPWDLQER 60 61 CRIGYEEQTEWYFFSHRDKKYPTGTRTNRATVAGFWKATGRDKAVYLNSKLIGMRKTLVF 120 121 YRGRAPNGQKSDWIIHEYYSLESHQNSPPQEEGWVVCRAFKKRTT |
| Interface Residues: | 81, 86, 88, 97, 99, 101, 121, 125, 126, 127, 130 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | UP00579A_1 wrCACGGmACyt UP00579A_2 gtACACGsAACy |
| Binding Sites: | ACGGAACC ATACGTAA ATTCCGTG CACGGCAC GTTACGTA TTACGTAA ACACGCAA ACACGGAA ACACGGCA ACACGTAA ACACGTCA ACGCAACT ACGGCACT ACGTAACT CACGCAAC CACGGAAC CACGTAAC GCACGGAA GCACGGCA GTTCCGTA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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