DNA Binding Motif
| Accessions: | UP00573A_2 (UniPROBE 20160601) |
| Names: | ANAC002, Arabidopsis NAC domain containing protein 2, At1g01720, ATAF1, NAC domain-containing protein 2, putative transcriptional activator with NAC domain, T1N6_12, T1N6.12 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 12 |
| Consensus: | rAGAGaCGTGyk |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.46 0.09 0.28 0.18 r 02 0.82 0 0.16 0.02 A 03 0.04 0.01 0.94 0 G 04 0.92 0.01 0 0.07 A 05 0.02 0.01 0.95 0.02 G 06 0.59 0.16 0.14 0.12 a 07 0.01 0.99 0 0 C 08 0 0.01 0.99 0.01 G 09 0 0 0.02 0.97 T 10 0.12 0.01 0.87 0 G 11 0.16 0.33 0.02 0.49 y 12 0.23 0.10 0.26 0.41 k |
| Binding TFs: | UP00573A (No apical meristem (NAM) protein) |
| Binding Sites: | CACGGCAC GTTACGTA TTACGTAA AATTACGT AATTATAA ACACGCAA ACACGGCA ACACGTAA ACGCAACC ACGGCACT ACGTAACT ACGTCTCT AGACGTAA ATATACAC CACGCAAC CACGTAAC GTTCCGTA GTTGCGTA TAATACAA TGCCGTAA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
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