DNA Binding Site
| Accessions: | TTACGTAA (UniPROBE 20160601), PF0026.1.1 (JASPAR 2024), PF0026.1.18 (JASPAR 2024), PF0026.1.3 (JASPAR 2024), PF0026.1.5 (JASPAR 2024) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | TTACGTAA |
| Type: | Heterodimer |
| Binding TFs: | UP00327A (bZIP transcription factor, Transcription factor PAP1) UP00453A (bZIP transcription factor, Transcription factor PAP1) UP00454A (bZIP transcription factor) UP00473A (bZIP transcription factor) UP00316A (bZIP transcription factor) UP00464A (bZIP transcription factor, Basic region leucine zipper, Aft1 osmotic stress response (OSM) domain) UP00084A (SAND domain) UP00455A (bZIP transcription factor, Basic region leucine zipper) UP00571A (No apical meristem (NAM) protein) UP00573A (No apical meristem (NAM) protein) UP00574A (No apical meristem (NAM) protein) UP00575A (No apical meristem (NAM) protein) UP00578A (No apical meristem (NAM) protein) UP00579A (No apical meristem (NAM) protein) UP00580A (No apical meristem (NAM) protein) |
| Binding Motifs: | UP00084A_1 smkkkkRCGYmmgayrs UP00316A_1 sgkywgmTTAyGTaAkcrrc UP00327A_1 mkktkmTTACGTAAkmymvt UP00084A_2 kgrkcrACGTygtymw UP00453A_1 / UP00453A_2 ttswwwgATTAsTAATmdwavwr UP00453A_3 ATTACGTAA UP00454A_1 whkktgmTTACGTAAkmycswk UP00455A_1 / UP00455A_2 maghygaTGACGTCAyyrtccw UP00455A_3 rTGACGTkyr UP00464A_1 / UP00464A_2 mhhkmmgATGACGTAwkmrrtt UP00464A_3 TGACGTCA UP00473A_1 / UP00473A_2 gsmmamtATTACGTAAtgsmryc UP00473A_3 ATTAcTAAT UP00571A_1 vyaCACGgmAcyr UP00571A_2 skwYACGGmAcTt UP00573A_1 raAGAGmCGTAt UP00573A_2 rAGAGaCGTGyk UP00574A_1 gtTTACGTAAycw UP00574A_2 mwayACGCAAcyk UP00575A_1 waTTACGCAAyc UP00575A_2 swaCACGCaAycw UP00578A_1 kaTTACGCAAyC UP00578A_2 gGTTGCGTAAyy UP00579A_1 wrCACGGmACyt UP00579A_2 gtACACGsAACy UP00580A_1 waCACGymACyb UP00580A_2 rkACACGsAACy PF0026.1 TTAyrTAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Xie X, Lu J, Kulbokas E.J, Golub T.R, Mootha V, Lindblad-Toh K, Lander E.S, Kellis M. Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals. Nature 434:338-45 (2005). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.