Transcription Factor
| Accessions: | UP00573A (UniPROBE 20160601) |
| Names: | ANAC002, Arabidopsis NAC domain containing protein 2, At1g01720, ATAF1, NAC domain-containing protein 2, putative transcriptional activator with NAC domain, T1N6_12, T1N6.12 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | putative transcriptional activator with NAC domain |
| Length: | 165 |
| Pfam Domains: | 7-131 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MSELLQLPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWELPGLALYGE 60 61 KEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPIGLPKPVGIKKALVFYAGKAPKGE 120 121 KTNWIMHEYRLADVDRSVRKKKNSLRLDDWVLCRIYNKKGATERR |
| Interface Residues: | 73, 78, 80, 89, 91, 93, 112, 116, 117, 118, 121 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | UP00573A_1 raAGAGmCGTAt UP00573A_2 rAGAGaCGTGyk |
| Binding Sites: | CACGGCAC GTTACGTA TTACGTAA AATTACGT AATTATAA ACACGCAA ACACGGCA ACACGTAA ACGCAACC ACGGCACT ACGTAACT ACGTCTCT AGACGTAA ATATACAC CACGCAAC CACGTAAC GTTCCGTA GTTGCGTA TAATACAA TGCCGTAA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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