DNA Binding Site
| Accessions: | ACACGCAA (UniPROBE 20160601) |
| Organisms: | Saccharomyces cerevisiae, Arabidopsis thaliana, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ACACGCAA |
| Type: | Heterodimer |
| Binding TFs: | UP00303A (Fork head domain) UP00570A (No apical meristem (NAM) protein) UP00571A (No apical meristem (NAM) protein) UP00572A (No apical meristem (NAM) protein) UP00573A (No apical meristem (NAM) protein) UP00574A (No apical meristem (NAM) protein) UP00575A (No apical meristem (NAM) protein) UP00576A (No apical meristem (NAM) protein) UP00578A (No apical meristem (NAM) protein) UP00579A (No apical meristem (NAM) protein) UP00580A (No apical meristem (NAM) protein) UP00587B (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Motifs: | UP00303A_1 rrwawtGACGCAawtwhgwk UP00570A_1 tACACGbmACyk UP00570A_2 maCACGsmActt UP00571A_1 vyaCACGgmAcyr UP00571A_2 skwYACGGmAcTt UP00572A_1 myACACGCAAycd UP00572A_2 htACACGCAAcck UP00572A_3 cwACACGCAACC UP00572A_4 wtACACGCAACck UP00573A_1 raAGAGmCGTAt UP00573A_2 rAGAGaCGTGyk UP00574A_1 gtTTACGTAAycw UP00574A_2 mwayACGCAAcyk UP00575A_1 waTTACGCAAyc UP00575A_2 swaCACGCaAycw UP00576A_1 stACACGCAAcC UP00576A_2 gggTAAGkAAwht UP00578A_1 kaTTACGCAAyC UP00578A_2 gGTTGCGTAAyy UP00579A_1 wrCACGGmACyt UP00579A_2 gtACACGsAACy UP00580A_1 waCACGymACyb UP00580A_2 rkACACGsAACy UP00587B_1 aacysaaAACACGCAwwyhywm |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.