DNA Binding Site

Accessions: ACACGCAA (UniPROBE 20160601)
Organisms: Saccharomyces cerevisiae, Arabidopsis thaliana, Homo sapiens
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 8
Sequence: ACACGCAA
Type: Heterodimer
Binding TFs: UP00303A (Fork head domain)
UP00570A (No apical meristem (NAM) protein)
UP00571A (No apical meristem (NAM) protein)
UP00572A (No apical meristem (NAM) protein)
UP00573A (No apical meristem (NAM) protein)
UP00574A (No apical meristem (NAM) protein)
UP00575A (No apical meristem (NAM) protein)
UP00576A (No apical meristem (NAM) protein)
UP00578A (No apical meristem (NAM) protein)
UP00579A (No apical meristem (NAM) protein)
UP00580A (No apical meristem (NAM) protein)
UP00587B (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Motifs: UP00303A_1 rrwawtGACGCAawtwhgwk
UP00570A_1 tACACGbmACyk
UP00570A_2 maCACGsmActt
UP00571A_1 vyaCACGgmAcyr
UP00571A_2 skwYACGGmAcTt
UP00572A_1 myACACGCAAycd
UP00572A_2 htACACGCAAcck
UP00572A_3 cwACACGCAACC
UP00572A_4 wtACACGCAACck
UP00573A_1 raAGAGmCGTAt
UP00573A_2 rAGAGaCGTGyk
UP00574A_1 gtTTACGTAAycw
UP00574A_2 mwayACGCAAcyk
UP00575A_1 waTTACGCAAyc
UP00575A_2 swaCACGCaAycw
UP00576A_1 stACACGCAAcC
UP00576A_2 gggTAAGkAAwht
UP00578A_1 kaTTACGCAAyC
UP00578A_2 gGTTGCGTAAyy
UP00579A_1 wrCACGGmACyt
UP00579A_2 gtACACGsAACy
UP00580A_1 waCACGymACyb
UP00580A_2 rkACACGsAACy
UP00587B_1 aacysaaAACACGCAwwyhywm
Publications: *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed]

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.