DNA Binding Motif

						

			
Accessions: UP00468A_1 (UniPROBE 20160601)

			
Names: BAP1, Species-specific tRNA Processing, SSY2, Stp1
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 23
Consensus: tcatatmGyGCCGYryscabrwb
Weblogo: 
PSSM: P0      A      C      G      T
01   0.23   0.05   0.15   0.56      t
02   0.18   0.65   0.09   0.08      c
03   0.54   0.12   0.18   0.16      a
04   0.22   0.24   0.08   0.46      t
05   0.50   0.10   0.20   0.21      a
06   0.19   0.17   0.11   0.52      t
07   0.41   0.35   0.12   0.12      m
08   0.06   0.02   0.89   0.03      G
09   0.05   0.59      0   0.36      y
10      0      0   0.98   0.01      G
11      0   0.99   0.01      0      C
12      0   0.99   0.01      0      C
13      0      0   0.97   0.02      G
14   0.01   0.26      0   0.74      Y
15   0.59   0.02   0.34   0.05      r
16   0.02   0.60   0.07   0.32      y
17   0.22   0.30   0.38   0.09      s
18   0.22   0.45   0.19   0.13      c
19   0.51   0.19   0.14   0.16      a
20   0.15   0.28   0.32   0.25      b
21   0.28   0.17   0.38   0.17      r
22   0.26   0.13   0.18   0.43      w
23   0.17   0.27   0.27   0.28      b
Binding TFs: UP00468A (Zinc finger, C2H2 type)
Binding Sites: ACGGCGCG
ATACGGCG
CACGGCAC
CACGGCGC
CGCCGTAC
CGCCGTGC
CGCGGCAC
GCGCCGCA
GCGCCGTA
GTGCCGTA
ACACGGCA
ACACGGCG
ACGCGGCG
ACGGCACT
ACGGCGCC
CGCACGGC
CGCCGCGC
CGCGGCGC
GCACGGCA
GCCGTGCC
			
Publications: Gordân R, Murphy KF, McCord RP, Zhu C, Vedenko A, Bulyk ML. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol : (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.