DNA Binding Site
| Accessions: | GCACGGCA (UniPROBE 20160601), MA0597.3.8 (JASPAR 2024), MA0597.3.9 (JASPAR 2024) |
| Organisms: | Saccharomyces cerevisiae, Arabidopsis thaliana, Homo sapiens |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | GCACGGCA |
| Type: | Heterodimer |
| Binding TFs: | UP00468A (Zinc finger, C2H2 type) UP00570A (No apical meristem (NAM) protein) UP00571A (No apical meristem (NAM) protein) UP00579A (No apical meristem (NAM) protein) UP00580A (No apical meristem (NAM) protein) Q9NVV9 (THAP domain) Q9NVV9 |
| Binding Motifs: | UP00468A_1 tcatatmGyGCCGYryscabrwb UP00570A_1 tACACGbmACyk UP00570A_2 maCACGsmActt UP00571A_1 vyaCACGgmAcyr UP00571A_2 skwYACGGmAcTt UP00579A_1 wrCACGGmACyt UP00579A_2 gtACACGsAACy UP00580A_1 waCACGymACyb UP00580A_2 rkACACGsAACy MA0597.3 gcAGGGCA |
| Publications: | Gordân R, Murphy KF, McCord RP, Zhu C, Vedenko A, Bulyk ML. Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights. Genome Biol : (2011). [Pubmed] Clouaire T, Roussigne M, Ecochard V, Mathe C, Amalric F, Girard J.P. The THAP domain of THAP1 is a large C2CH module with zinc-dependent sequence-specific DNA-binding activity. Proceedings of the National Academy of Sciences of the United States of America 102:6907-12 (2005). [Pubmed] |
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