DNA Binding Motif
| Accessions: | UP00580A_2 (UniPROBE 20160601) |
| Names: | ANAC030, Arabidopsis NAC domain containing protein 30, ARABIDOPSIS NAC-DOMAIN PROTEIN 030, F17M19_8, F17M19.8, vascular related NAC-domain protein 7, VND7 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 12 |
| Consensus: | rkACACGsAACy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.35 0.14 0.42 0.09 r 02 0.16 0.08 0.39 0.38 k 03 0.78 0.05 0.10 0.07 A 04 0.02 0.78 0.08 0.12 C 05 0.95 0.01 0.01 0.03 A 06 0.03 0.95 0.01 0.01 C 07 0.01 0.02 0.96 0.01 G 08 0.03 0.37 0.41 0.19 s 09 0.77 0.21 0.01 0.02 A 10 0.92 0.01 0.01 0.05 A 11 0.07 0.75 0.09 0.10 C 12 0.02 0.34 0.05 0.58 y |
| Binding TFs: | UP00580A (No apical meristem (NAM) protein) |
| Binding Sites: | CACGGCAC GTGCCGTA GTTACGTA TTACGCAA TTACGTAA ACACGCAA ACACGGAA ACACGGCA ACACGTAA ACACGTCA ACGCAACT ACGGCACT ACGTAACT CACGCAAC CACGGAAC CACGTAAC GCACGGCA GTTCCGTA GTTGCGTA TGCCGTAA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
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