DNA Binding Site
| Accessions: | GCAGCTGC (UniPROBE 20160601), MA0500.3.11 (JASPAR 2024), MA0500.3.12 (JASPAR 2024), MA1815.2.15 (JASPAR 2024), MA1815.2.16 (JASPAR 2024), MA1815.2.2 (JASPAR 2024), MA1815.2.3 (JASPAR 2024), MA2295.1.17 (JASPAR 2024), MA2295.1.18 (JASPAR 2024) |
| Organisms: | Mus musculus, Caenorhabditis elegans, Homo sapiens, Oryza sativa, Drosophila melanogaster |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | GCAGCTGC |
| Type: | Heterodimer |
| Binding TFs: | P15173 (Helix-loop-helix DNA-binding domain, Myogenic Basic domain) UP00099A (Helix-loop-helix DNA-binding domain) UP00361A (Helix-loop-helix DNA-binding domain) UP00363A (Helix-loop-helix DNA-binding domain) UP00379A (Helix-loop-helix DNA-binding domain) UP00384A (Helix-loop-helix DNA-binding domain) UP00548A (Helix-loop-helix DNA-binding domain) Q6ZIK5 (WRC, QLQ) P10083 P15173 Q6ZIK5 |
| Binding Motifs: | UP00099A_1 ytyarCAGCTGCtvytk UP00361A_1 agwaaaawrwhdwr UP00363A_1 cwhaaaawawwwAa UP00099A_2 bymwcCCcryccyrty UP00361A_2 / UP00384A_5 rrmsCAsCTGbGccmt UP00363A_2 / UP00384A_4 ykaaCAbCTGTCvmda UP00379A_2 / UP00384A_7 mrtrmCACCTGCtaayy UP00548A_1 sGgamrGrCACGTGtCsyhCysy MA0500.3 rCAGCTGy MA1815.2 GCAGCAGC MA2295.1 gCAGCTGc |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Cao Y, Kumar R.M, Penn B.H, Berkes C.A, Kooperberg C, Boyer L.A, Young R.A, Tapscott S.J. Global and gene-specific analyses show distinct roles for Myod and Myog at a common set of promoters. The EMBO journal 25:502-11 (2006). [Pubmed] Kuijt SJ, Greco R, Agalou A, Shao J, 't Hoen CC, Overnäs E, Osnato M, Curiale S, Meynard D, van Gulik R, de Faria Maraschin S, Atallah M, de Kam RJ, Lamers GE, Guiderdoni E, Rossini L, Meijer AH, Ouwerkerk PB. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol 164:1952-66 (2014). [Pubmed] Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EE, Taipale J. Conservation of transcription factor binding specificities across 600 million years of bilateria evolution. Elife : (2015). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.