Transcription Factor
| Accessions: | Q6ZIK5 (JASPAR 2024), GrowthRegulatingFactor4 (EEADannot 2023-12-22) |
| Names: | GRF4_ORYSJ, Growth-regulating factor 4, OsGRF4, Protein GRAIN LENGTH AND WIDTH 2, Protein GRAIN SIZE ON CHROMOSOME 2, Protein PANICLE TRAITS 2, Transcription activator GRF4, Q6ZIK5 |
| Organisms: | Oryza sativa |
| Libraries: | JASPAR 2024 1, EEADannot 2023-12-22 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Length: | 394 |
| Pfam Domains: | 64-99 QLQ 125-169 WRC |
| Sequence: (in bold interface residues) | 1 MAMPYASLSPAVADHRSSPAAATASLLPFCRSTPLSAGGGGVAMGEDAPMTARWPPAAAA 60 61 RLPPFTAAQYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLAARFYNHPALGYGPYF 120 121 GKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVETQLVAQSQPPSS 180 181 VVGSAAAPLAAASNGSSFQNHSLYPAIAGSNGGGGGRNMPSSFGSALGSQLHMDNAAPYA 240 241 AVGGGTGKDLRYTAYGTRSLADEQSQLITEAINTSIENPWRLLPSQNSPFPLSSYSQLGA 300 301 LSDLGQNTPSSLSKVQRQPLSFFGNDYAAVDSVKQENQTLRPFFDEWPKGRDSWSDLADE 360 361 NANLSSFSGTQLSISIPMASSDFSAASSRSTNGD |
| Interface Residues: | 106, 109, 110, 303 |
| 3D-footprint Homologues: | 1zq3_P, 6cnb_S |
| Binding Motifs: | MA1815.1 mwGCAGCAGCwrc EEAD0016 ccGCCGCCGCcg MA1815.2 GCAGCAGC |
| Binding Sites: | MA1815.2.15 / MA1815.2.16 / MA1815.2.2 / MA1815.2.3 MA1815.2.12 MA1815.1.1 / MA1815.1.2 MA1815.1.10 / MA1815.1.19 MA1815.1.11 MA1815.1.12 MA1815.1.13 MA1815.1.14 MA1815.1.15 MA1815.1.16 MA1815.1.17 MA1815.1.18 MA1815.1.19 MA1815.1.2 / MA1815.1.7 MA1815.1.20 MA1815.1.3 / MA1815.1.8 MA1815.1.4 / MA1815.1.9 MA1815.1.11 / MA1815.1.5 MA1815.1.12 / MA1815.1.6 MA1815.1.14 / MA1815.1.7 MA1815.1.16 / MA1815.1.8 MA1815.1.17 / MA1815.1.9 MA1815.2.1 MA1815.1.1 MA1815.1.10 MA1815.1.13 MA1815.1.15 MA1815.1.18 MA1815.1.20 MA1815.1.3 MA1815.1.4 MA1815.1.5 MA1815.1.6 MA1815.2.10 MA1815.2.11 MA1815.2.13 MA1815.2.14 MA1815.2.17 / MA1815.2.4 MA1815.2.18 MA1815.2.19 / MA1815.2.5 MA1815.2.20 MA1815.2.6 / MA1815.2.7 / MA1815.2.8 MA1815.2.9 |
| Publications: | Kuijt SJ, Greco R, Agalou A, Shao J, 't Hoen CC, Overnäs E, Osnato M, Curiale S, Meynard D, van Gulik R, de Faria Maraschin S, Atallah M, de Kam RJ, Lamers GE, Guiderdoni E, Rossini L, Meijer AH, Ouwerkerk PB. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol 164:1952-66 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.