DNA Binding Motif
| Accessions: | UP00363A_2 (UniPROBE 20160601), UP00384A_4 (UniPROBE 20160601) |
| Names: | HLH-2_HLH-14 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | ykaaCAbCTGTCvmda |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.24 0.25 0.24 0.27 y 02 0.21 0.19 0.25 0.35 k 03 0.56 0.12 0.17 0.15 a 04 0.64 0.15 0.19 0.02 a 05 0.01 0.97 0.01 0.01 C 06 0.98 0.01 0.01 0.01 A 07 0 0.41 0.33 0.26 b 08 0.03 0.95 0.01 0.01 C 09 0.01 0.01 0.01 0.98 T 10 0.01 0.01 0.97 0.01 G 11 0.01 0.14 0.08 0.77 T 12 0.03 0.72 0.03 0.22 C 13 0.34 0.27 0.27 0.11 v 14 0.35 0.26 0.21 0.18 m 15 0.29 0.16 0.27 0.28 d 16 0.49 0.16 0.13 0.21 a |
| Type: | Heterodimer |
| Binding TFs: | UP00363A (Helix-loop-helix DNA-binding domain) UP00384A (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | AACAGCTG AACAGGTG ACACCTGC ACACCTGT ACAGCTGC ACAGCTGT ACAGGTGC ACCACCTG AGCAGGTG CACCTGCC CACCTGTC CAGCTGTC CCACCTGC GCAGCTGC AACATCTG ACATCTGC AGCAGATG CATCTGCC CATCTGTC CCATCTGC |
| Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] |
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