DNA Binding Site
| Accessions: | CAGCTGTC (UniPROBE 20160601) |
| Organisms: | Mus musculus, Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | CAGCTGTC |
| Type: | Heterodimer |
| Binding TFs: | UP00036A (Helix-loop-helix DNA-binding domain, Myogenic Basic domain) UP00099A (Helix-loop-helix DNA-binding domain) UP00357A (Helix-loop-helix DNA-binding domain) UP00363A (Helix-loop-helix DNA-binding domain) UP00378A (Helix-loop-helix DNA-binding domain) UP00379A (Helix-loop-helix DNA-binding domain) UP00381A (Helix-loop-helix DNA-binding domain) UP00384A (Helix-loop-helix DNA-binding domain) UP00387A (Helix-loop-helix DNA-binding domain) UP00548A (Helix-loop-helix DNA-binding domain) UP00548C (Helix-loop-helix DNA-binding domain) UP00548D (Helix-loop-helix DNA-binding domain) |
| Binding Motifs: | UP00036A_1 rrrgrACAGbTGtyyg UP00099A_1 ytyarCAGCTGCtvytk UP00357A_1 whyrATCAGCTGatsk UP00363A_1 cwhaaaawawwwAa UP00378A_1 ctwwramwwwmmaw UP00381A_1 akwraTwagwaswm UP00387A_1 ksrACAGCTGTyrwrr UP00036A_2 vsmrmCAgmCgcrcc UP00099A_2 bymwcCCcryccyrty UP00363A_2 / UP00384A_4 ykaaCAbCTGTCvmda UP00378A_2 / UP00384A_6 kktrmCAksTGkymmh UP00379A_2 / UP00384A_7 mrtrmCACCTGCtaayy UP00381A_2 / UP00384A_10 hmgamCAgcTGkymtc UP00548A_1 sGgamrGrCACGTGtCsyhCysy UP00548C_1 rywgggRACAGCTGtyyksracm UP00548D_1 mrkrkrkRACAGcTGTymgrkmm |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.