DNA Binding Motif
| Accessions: | UP00099A_1 (UniPROBE 20160601) |
| Names: | 2410083I15Rik, achaete-scute complex homolog-like 2 (Drosophila), Achaete-scute homolog 2, Ascl2, Mash-2, Mash2 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | ytyarCAGCTGCtvytk |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.17 0.33 0.19 0.32 y 02 0.15 0.19 0.24 0.42 t 03 0.09 0.48 0.12 0.30 y 04 0.47 0.20 0.23 0.10 a 05 0.29 0.18 0.45 0.08 r 06 0.01 0.97 0.01 0.01 C 07 0.95 0.01 0.01 0.03 A 08 0.01 0.18 0.76 0.05 G 09 0.05 0.82 0.12 0.01 C 10 0.02 0.01 0.01 0.96 T 11 0.01 0.01 0.98 0.01 G 12 0.04 0.72 0.09 0.15 C 13 0.12 0.24 0.17 0.47 t 14 0.32 0.32 0.29 0.07 v 15 0.20 0.37 0.16 0.27 y 16 0.22 0.21 0.19 0.38 t 17 0.15 0.14 0.39 0.33 k |
| Binding TFs: | UP00099A (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | AACAGCTG AACAGGTG ACACCTGC ACAGCTGC ACAGCTGG ACAGCTGT ACAGGTGC AGCAGCTG AGCAGGTG CACCTGCA CACCTGCC CAGCTGCA CAGCTGCC CAGCTGCG CAGCTGTA CAGCTGTC CCACCTGC CCAGCTGC GCACCTGC GCAGCTGC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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