DNA Binding Site
| Accessions: | CAATTAAC (UniPROBE 20160601) |
| Organisms: | Mus musculus, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | CAATTAAC |
| Type: | Heterodimer |
| Binding TFs: | UP00104A (Homeobox domain) UP00145A (Homeobox domain) UP00151A (Homeobox domain) UP00155A (Homeobox domain) UP00166A (Homeobox domain) UP00178A (Homeobox domain) UP00157A (Homeobox domain) UP00598B (Homeobox domain) UP00603C (Homeobox domain) UP00609G (Homeobox domain, 'Paired box' domain, Homeobox KN domain) UP00611A (Homeobox domain, 'Paired box' domain) |
| Binding Motifs: | UP00104A_1 msvAGCAATTAAwgvwt UP00145A_1 aamAAcCAATTAAswh UP00151A_1 taakYAATTRrtkrtr UP00155A_1 acaAgCAATTAAwgvrT UP00157A_1 asaAgCAATTAAwrrat UP00166A_1 aamAAcCAATTArkwc UP00178A_1 cgsryyAATTrrkways UP00598B_1 ykyrscmYTAATTAAkmwsckg UP00598B_2 gkcmscryTAATTArkvhkssb UP00603C_1 awwsydrACYAATTAdsgcmdy UP00603C_2 ydmmayrCyAATTrGtmwtyrs UP00609G_1 kawmkyTAATCGATTAmyrkmd UP00611A_1 rcrkmwswrTGCAyasrwcmAtr |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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