DNA Binding Site
| Accessions: | CCGGATTA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | CCGGATTA |
| Type: | Heterodimer |
| Binding TFs: | UP00109A (Homeobox domain, Homeobox KN domain) UP00111A (Homeobox domain) UP00112A (Homeobox domain) UP00125A (Homeobox domain) UP00143A (Homeobox domain) UP00153A (Homeobox domain) UP00160A (Homeobox domain) UP00176A (Homeobox domain) UP00229A (Homeobox domain) UP00265A (Homeobox domain) UP00267A (Homeobox domain) UP00508A (Homeobox domain) UP00586A (Homeobox domain) UP00586B (Homeobox domain) UP00586C (Homeobox domain) UP00586D (Homeobox domain) UP00586F (Homeobox domain) UP00615C (Homeobox domain) |
| Binding Motifs: | UP00109A_1 awAArcGGATTAwhg UP00111A_1 wdrwmmGGATTArkbww UP00112A_1 aawmryTAATCCsytwv UP00125A_1 kkwrrGGATTAAthrwy UP00143A_1 rrmrGGGATTAAtyrtc UP00153A_1 tkrrrGGGATTAAmaah UP00160A_1 wbrgrGGGATTAAcwmh UP00176A_1 ykwwGsGGATTArCck UP00229A_1 dgwrgGGATTAAtwtwy UP00265A_1 rggGGGATTAgCtrsc UP00267A_1 kdwrgGGATTAAtydtc UP00508A_1 wcctrrvGGGATTAAktrtcms UP00586A_1 wymawygCTAATCCsCttwwdr UP00586B_1 wmaawyrcTAATCCscttwwwr UP00586C_1 drdgykaGmTAATCCscytwgw UP00586D_1 twwwawsGGATAATCCchtywmm UP00586F_1 ratmwmAabCGGATTAgbtwwsa UP00615C_2 gykwaaAcGGATTAaTmwtgmvw |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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