DNA Binding Motif
| Accessions: | UP00109A_1 (UniPROBE 20160601) |
| Names: | Not Available, Obox6, oocyte specific homeobox 6 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 15 |
| Consensus: | awAArcGGATTAwhg |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.51 0.24 0.11 0.14 a 02 0.30 0.21 0.20 0.29 w 03 0.69 0.04 0.14 0.13 A 04 0.68 0.09 0.04 0.19 A 05 0.35 0.12 0.35 0.19 r 06 0.14 0.61 0.19 0.06 c 07 0.04 0 0.96 0 G 08 0 0 0.98 0.01 G 09 0.97 0.03 0 0 A 10 0 0 0 0.99 T 11 0.01 0.01 0 0.98 T 12 0.97 0 0 0.03 A 13 0.44 0.02 0.08 0.46 w 14 0.25 0.34 0.05 0.35 h 15 0.12 0.23 0.46 0.19 g |
| Binding TFs: | UP00109A (Homeobox domain, Homeobox KN domain) |
| Binding Sites: | AATAATCC AGGATTAA AGGATTAT AGGGATTA ATAATCCA ATAATCCC ATAATCCG ATTAATCC CATAATCC CCGGATTA CGGATTAA GAGGATTA GATAATCC GCGGATTA GGATTAAA GGATTAAC GGATTATA GGGATTAA GGGGATTA TAATCCGA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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