DNA Binding Site
| Accessions: | GATAATCC (UniPROBE 20160601) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | GATAATCC |
| Type: | Heterodimer |
| Binding TFs: | UP00216A (Homeobox domain) UP00109A (Homeobox domain, Homeobox KN domain) UP00112A (Homeobox domain) UP00125A (Homeobox domain) UP00160A (Homeobox domain) UP00239A (Homeobox domain) UP00265A (Homeobox domain) UP00208A (Homeobox domain) UP00508A (Homeobox domain) UP00586A (Homeobox domain) UP00586B (Homeobox domain) UP00586C (Homeobox domain) UP00586D (Homeobox domain) UP00586F (Homeobox domain) |
| Binding Motifs: | UP00109A_1 awAArcGGATTAwhg UP00112A_1 aawmryTAATCCsytwv UP00125A_1 kkwrrGGATTAAthrwy UP00160A_1 wbrgrGGGATTAAcwmh UP00208A_1 wdrrGGGATTAAwTywm UP00216A_1 ttarGGGGATTAAcwwy UP00239A_1 wkrgGGGGATTAAmwat UP00265A_1 rggGGGATTAgCtrsc UP00208A_2 arragGGATTAAwTrwm UP00508A_1 wcctrrvGGGATTAAktrtcms UP00586A_1 wymawygCTAATCCsCttwwdr UP00586B_1 wmaawyrcTAATCCscttwwwr UP00586C_1 drdgykaGmTAATCCscytwgw UP00586D_1 twwwawsGGATAATCCchtywmm UP00586F_1 ratmwmAabCGGATTAgbtwwsa |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.