DNA Binding Site
| Accessions: | ATAATCCC (UniPROBE 20160601) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | ATAATCCC |
| Type: | Heterodimer |
| Binding TFs: | UP00216A (Homeobox domain) UP00109A (Homeobox domain, Homeobox KN domain) UP00111A (Homeobox domain) UP00112A (Homeobox domain) UP00125A (Homeobox domain) UP00143A (Homeobox domain) UP00153A (Homeobox domain) UP00160A (Homeobox domain) UP00176A (Homeobox domain) UP00229A (Homeobox domain) UP00239A (Homeobox domain) UP00265A (Homeobox domain) UP00267A (Homeobox domain) UP00208A (Homeobox domain) UP00508A (Homeobox domain) UP00586C (Homeobox domain) UP00586D (Homeobox domain) UP00615A / UP00615E (Homeobox domain) UP00615B (Homeobox domain) UP00615C (Homeobox domain) |
| Binding Motifs: | UP00109A_1 awAArcGGATTAwhg UP00111A_1 wdrwmmGGATTArkbww UP00112A_1 aawmryTAATCCsytwv UP00125A_1 kkwrrGGATTAAthrwy UP00143A_1 rrmrGGGATTAAtyrtc UP00153A_1 tkrrrGGGATTAAmaah UP00160A_1 wbrgrGGGATTAAcwmh UP00176A_1 ykwwGsGGATTArCck UP00208A_1 wdrrGGGATTAAwTywm UP00216A_1 ttarGGGGATTAAcwwy UP00229A_1 dgwrgGGATTAAtwtwy UP00239A_1 wkrgGGGGATTAAmwat UP00265A_1 rggGGGATTAgCtrsc UP00267A_1 kdwrgGGATTAAtydtc UP00208A_2 arragGGATTAAwTrwm UP00508A_1 wcctrrvGGGATTAAktrtcms UP00586C_1 drdgykaGmTAATCCscytwgw UP00586D_1 twwwawsGGATAATCCchtywmm UP00615A_1 kyysdtrgGGATTAAtwrkacs UP00615A_2 kkkcwwtyTAATCCcyykmawm UP00615B_1 wkwraaaAgGGATTArTagtrrr UP00615B_2 khysrwrrGGATTAAtwrkaCs UP00615C_1 mcgtmywATTAATCCyyhwrar UP00615C_2 gykwaaAcGGATTAaTmwtgmvw UP00615E_1 kwtkmrrkGGATTArawwkaamt |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.