DNA Binding Site

Accessions: CGGATTAA (UniPROBE 20160601), UN0736.1.5 (JASPAR 2024)
Organisms: Mus musculus, Saccharomyces cerevisiae, Drosophila melanogaster, Homo sapiens, Caenorhabditis elegans
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Sequence: CGGATTAA
Type: Heterodimer
Binding TFs: UP00474A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
UP00216A (Homeobox domain)
UP00109A (Homeobox domain, Homeobox KN domain)
UP00111A (Homeobox domain)
UP00112A (Homeobox domain)
UP00125A (Homeobox domain)
UP00143A (Homeobox domain)
UP00153A (Homeobox domain)
UP00176A (Homeobox domain)
UP00229A (Homeobox domain)
UP00267A (Homeobox domain)
UP00288A (Fungal Zn(2)-Cys(6) binuclear cluster domain)
UP00208A (Homeobox domain)
UP00508A (Homeobox domain)
UP00586A (Homeobox domain)
UP00586D (Homeobox domain)
UP00586F (Homeobox domain)
UP00615B (Homeobox domain)
UP00615C (Homeobox domain)
G5ED66
Binding Motifs: UP00109A_1 awAArcGGATTAwhg
UP00111A_1 wdrwmmGGATTArkbww
UP00112A_1 aawmryTAATCCsytwv
UP00125A_1 kkwrrGGATTAAthrwy
UP00143A_1 rrmrGGGATTAAtyrtc
UP00153A_1 tkrrrGGGATTAAmaah
UP00176A_1 ykwwGsGGATTArCck
UP00208A_1 wdrrGGGATTAAwTywm
UP00216A_1 ttarGGGGATTAAcwwy
UP00229A_1 dgwrgGGATTAAtwtwy
UP00267A_1 kdwrgGGATTAAtydtc
UP00288A_1 hwcykyCGGAwaAAyttkmr
UP00208A_2 arragGGATTAAwTrwm
UP00474A_1 wmrswatcCGGAwmAWytywakt
UP00508A_1 wcctrrvGGGATTAAktrtcms
UP00586A_1 wymawygCTAATCCsCttwwdr
UP00586D_1 twwwawsGGATAATCCchtywmm
UP00586F_1 ratmwmAabCGGATTAgbtwwsa
UP00615B_2 khysrwrrGGATTAAtwrkaCs
UP00615C_1 mcgtmywATTAATCCyyhwrar
UP00615C_2 gykwaaAcGGATTAaTmwtgmvw
UN0736.1 ckGATwAG
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

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