DNA Binding Site
| Accessions: | ATTAATCC (UniPROBE 20160601), MA0077.2.2 (JASPAR 2024) |
| Organisms: | Mus musculus, Saccharomyces cerevisiae, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | ATTAATCC |
| Type: | Heterodimer |
| Binding TFs: | P48436 (HMG (high mobility group) box, Domain of unknown function (DUF1898), Sox developmental protein N terminal ) UP00474A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00216A (Homeobox domain) UP00109A (Homeobox domain, Homeobox KN domain) UP00111A (Homeobox domain) UP00112A (Homeobox domain) UP00125A (Homeobox domain) UP00143A (Homeobox domain) UP00153A (Homeobox domain) UP00160A (Homeobox domain) UP00176A (Homeobox domain) UP00229A (Homeobox domain) UP00239A (Homeobox domain) UP00265A (Homeobox domain) UP00267A (Homeobox domain) UP00288A (Fungal Zn(2)-Cys(6) binuclear cluster domain) UP00208A (Homeobox domain) UP00508A (Homeobox domain) UP00586B (Homeobox domain) UP00586D (Homeobox domain) UP00586E (Homeobox domain) UP00615A / UP00615E (Homeobox domain) UP00615B (Homeobox domain) UP00615C (Homeobox domain) P48436 |
| Binding Motifs: | UP00109A_1 awAArcGGATTAwhg UP00111A_1 wdrwmmGGATTArkbww UP00112A_1 aawmryTAATCCsytwv UP00125A_1 kkwrrGGATTAAthrwy UP00143A_1 rrmrGGGATTAAtyrtc UP00153A_1 tkrrrGGGATTAAmaah UP00160A_1 wbrgrGGGATTAAcwmh UP00176A_1 ykwwGsGGATTArCck UP00208A_1 wdrrGGGATTAAwTywm UP00216A_1 ttarGGGGATTAAcwwy UP00229A_1 dgwrgGGATTAAtwtwy UP00239A_1 wkrgGGGGATTAAmwat UP00265A_1 rggGGGATTAgCtrsc UP00267A_1 kdwrgGGATTAAtydtc UP00288A_1 hwcykyCGGAwaAAyttkmr UP00208A_2 arragGGATTAAwTrwm UP00474A_1 wmrswatcCGGAwmAWytywakt UP00508A_1 wcctrrvGGGATTAAktrtcms UP00586B_1 wmaawyrcTAATCCscttwwwr UP00586D_1 twwwawsGGATAATCCchtywmm UP00586E_1 cwgwwtAytsGGATTArgwrwv UP00615A_1 kyysdtrgGGATTAAtwrkacs UP00615A_2 kkkcwwtyTAATCCcyykmawm UP00615B_1 wkwraaaAgGGATTArTagtrrr UP00615B_2 khysrwrrGGATTAAtwrkaCs UP00615C_1 mcgtmywATTAATCCyyhwrar UP00615C_2 gykwaaAcGGATTAaTmwtgmvw UP00615E_1 kwtkmrrkGGATTArawwkaamt MA0077.2 CyATTGTT |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] Mertin S., McDowall S. G., Harley V. R. The DNA-binding specificity of SOX9 and other SOX proteins. Nucleic Acids Res. 27:1359-1364 (1999). [Pubmed] |
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