Transcription Factor
| Accessions: | UP00112A (UniPROBE 20160601) |
| Names: | goosecoid, Gsc, Homeobox protein goosecoid |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | Q02591 |
| Description: | goosecoid |
| Length: | 93 |
| Pfam Domains: | 17-73 Homeobox domain |
| Sequence: (in bold interface residues) | 1 SRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKV 60 61 EVWFKNRRAKWRRQKRSSSEESESAEKWNKTSS |
| Interface Residues: | 16, 17, 18, 19, 20, 58, 59, 61, 62, 65, 66, 69, 70, 72, 73 |
| 3D-footprint Homologues: | 4j19_B, 1puf_A, 2h1k_B, 1puf_B, 1fjl_B, 6a8r_A, 3cmy_A, 1ig7_A, 3d1n_M, 5zfz_A, 6fqp_B, 6m3d_C, 3lnq_A, 2lkx_A, 1nk2_P, 1zq3_P, 1jgg_B, 2ld5_A, 7q3o_C, 6es3_K, 5flv_I, 5zjt_E, 3a01_E, 1au7_A, 5hod_A, 2hdd_A, 1b72_A, 5jlw_D, 3rkq_B, 2r5y_A, 4xrs_G, 2hos_A, 7psx_B, 4cyc_A, 2d5v_B, 1e3o_C, 1le8_A, 7xrc_C, 2xsd_C, 3l1p_A, 4qtr_D, 6wig_A, 8g87_X, 1o4x_A, 1du0_A |
| Binding Motifs: | UP00112A_1 aawmryTAATCCsytwv |
| Binding Sites: | ACGGATTA ACTAATCC AGGATTAA AGGATTAG AGGGATTA ATAATCCC ATTAATCC CCGGATTA CCTAATCC CGGATTAA CGGATTAG CTTAATCC GATAATCC GATTAATC GCGGATTA GCTAATCC GGATTAAC GGGATTAA GGGGATTA GGATTAGA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.