DNA Binding Motif
| Accessions: | UP00508A_1 (UniPROBE 20160601) |
| Names: | CG1447, D-Ptx1, Dmel\CG1447, Paired-type homeobox 1, Pituitary homeobox homolog Ptx1, Ptx1 |
| Organisms: | Drosophila melanogaster |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 22 |
| Consensus: | wcctrrvGGGATTAAktrtcms |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.36 0.16 0.15 0.33 w 02 0.15 0.44 0.23 0.18 c 03 0.11 0.53 0.13 0.23 c 04 0.21 0.20 0.18 0.41 t 05 0.59 0.07 0.27 0.07 r 06 0.29 0.24 0.26 0.21 r 07 0.29 0.26 0.29 0.16 v 08 0.10 0.15 0.72 0.03 G 09 0.04 0 0.96 0 G 10 0.01 0 0.98 0.01 G 11 0.96 0.04 0 0 A 12 0 0 0 0.99 T 13 0.01 0.01 0 0.98 T 14 0.92 0 0 0.07 A 15 0.73 0.01 0.16 0.10 A 16 0.08 0.19 0.25 0.48 k 17 0.18 0.21 0.04 0.57 t 18 0.32 0.14 0.42 0.11 r 19 0.24 0.23 0.19 0.34 t 20 0.17 0.44 0.18 0.20 c 21 0.26 0.35 0.21 0.18 m 22 0.16 0.29 0.43 0.13 s |
| Binding TFs: | UP00508A (Homeobox domain) |
| Binding Sites: | ACTAATCC AGGATTAA AGGGATTA ATAATCCC ATTAATCC CCGGATTA CGGATTAA CGGGATTA CTAATCCA CTAATCCC CTTAATCC GATAATCC GCTAATCC GGATTAAA GGATTAAC GGGATTAA GGGGATTA GTGGATTA TAATCCCA TGGATTAA |
| Publications: | Busser BW, Shokri L, Jaeger SA, Gisselbrecht SS, Singhania A, Berger MF, Zhou B, Bulyk ML, Michelson AM. Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity. Development 139:1164-74 (2012). [Pubmed] |
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