DNA Binding Motif
| Accessions: | UP00125A_1 (UniPROBE 20160601) |
| Names: | 9430085M16Rik, ALL1-responsive protein ARP1, Brx1, BRX1 homeoprotein, Brx1a, Brx1b, Munc30, Orthodenticle-like homeobox 2, Otlx2, paired-like homeodomain transcription factor 2, Paired-like homeodomain transcription factor Munc 30, Pituitary homeobox 2, Pitx2, Pitx2a, Pitx2b, Pitx2c, Ptx2, Rgs, Rieg, solurshin |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | kkwrrGGATTAAthrwy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.24 0.23 0.26 0.27 k 02 0.24 0.08 0.41 0.27 k 03 0.39 0.13 0.22 0.26 w 04 0.46 0.17 0.27 0.10 r 05 0.29 0.10 0.56 0.05 r 06 0.11 0 0.89 0 G 07 0.01 0 0.98 0.01 G 08 0.95 0.05 0 0 A 09 0 0.01 0 0.99 T 10 0.01 0.01 0 0.98 T 11 0.90 0 0 0.10 A 12 0.70 0.04 0.19 0.07 A 13 0.09 0.16 0.09 0.65 t 14 0.26 0.32 0.11 0.31 h 15 0.38 0.13 0.25 0.24 r 16 0.28 0.17 0.21 0.34 w 17 0.19 0.43 0.10 0.28 y |
| Binding TFs: | UP00125A (Homeobox domain) |
| Binding Sites: | ACTAATCC AGGATTAA AGGATTAG AGGATTAT AGGGATTA ATAATCCC ATTAATCC CCGGATTA CGGATTAA CTAATCCC CTTAATCC GAGGATTA GATAATCC GCTAATCC GGATTAAA GGATTAAC GGATTATA GGGGATTA TAATCCCA TGGATTAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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