DNA Binding Site
| Accessions: | CAATTAAA (UniPROBE 20160601) |
| Organisms: | Mus musculus, Drosophila melanogaster, Homo sapiens |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 8 |
| Sequence: | CAATTAAA |
| Type: | Heterodimer |
| Binding TFs: | UP00104A (Homeobox domain) UP00134A (Homeobox domain) UP00145A (Homeobox domain) UP00151A (Homeobox domain) UP00155A (Homeobox domain) UP00213A (Homeobox domain) UP00234A (Homeobox domain) UP00244A (Homeobox domain) UP00157A (Homeobox domain) UP00507A (Homeobox domain) UP00597D (Homeobox domain) UP00598B (Homeobox domain) UP00603A (Homeobox domain) UP00603C (Homeobox domain) |
| Binding Motifs: | UP00104A_1 msvAGCAATTAAwgvwt UP00134A_1 mrmCyAATAAAAwwys UP00145A_1 aamAAcCAATTAAswh UP00151A_1 taakYAATTRrtkrtr UP00155A_1 acaAgCAATTAAwgvrT UP00157A_1 asaAgCAATTAAwrrat UP00213A_1 rcggycATwAAAwtadw UP00234A_1 krmwayTAATTAatwm UP00244A_1 kwatyAATTAATaayww UP00507A_1 tarcrsCrCyAATTAgygywyy UP00597D_1 tkswwyyyaATAAAAwwcmmtt UP00598B_2 gkcmscryTAATTArkvhkssb UP00603A_1 mtwyaaaAAcCAATTAacwmray UP00603C_1 awwsydrACYAATTAdsgcmdy |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.