DNA Binding Site
| Accessions: | AACTGTCA (UniPROBE 20160601), MA1394.3.19 (JASPAR 2024), MA1394.3.5 (JASPAR 2024) |
| Organisms: | Mus musculus, Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | AACTGTCA |
| Type: | Heterodimer |
| Binding TFs: | UP00122A (Homeobox domain, Homeobox KN domain) UP00186A (Homeobox domain, Homeobox KN domain) UP00203A (Homeobox domain, Homeobox KN domain) UP00205A (Homeobox domain, Homeobox KN domain) UP00226A (Homeobox domain, Homeobox KN domain) UP00258A (Homeobox domain, Homeobox KN domain) O23160 (Myb-like DNA-binding domain, Myb-like DNA-binding domain) O23160 |
| Binding Motifs: | UP00122A_1 dakwwTGACAGCTsskw UP00186A_1 wasbAsCTGTCAWwac UP00203A_1 wrmsAsCTGTCAawmc UP00205A_1 aarsrsCTGTCAathy UP00226A_1 warsAsCTGTCAAway UP00258A_1 aacyAGCTGTCAAwmc MA1394.3 AACGGTcA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
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