DNA Binding Motif
| Accessions: | UP00205A_1 (UniPROBE 20160601) |
| Names: | D230005H23Rik, Pbx/knotted 1 homeobox 2, Pknox2, Prep2 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | aarsrsCTGTCAathy |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.43 0.20 0.16 0.21 a 02 0.60 0.10 0.17 0.13 a 03 0.26 0.20 0.42 0.12 r 04 0.03 0.44 0.35 0.18 s 05 0.61 0.03 0.35 0.01 r 06 0.03 0.55 0.41 0.01 s 07 0.02 0.97 0 0.01 C 08 0 0.04 0 0.96 T 09 0 0 0.99 0 G 10 0.01 0.01 0 0.98 T 11 0 0.99 0 0.01 C 12 0.98 0 0.02 0 A 13 0.59 0.20 0.05 0.16 a 14 0.21 0.16 0.05 0.58 t 15 0.30 0.26 0.18 0.26 h 16 0.16 0.27 0.22 0.36 y |
| Binding TFs: | UP00205A (Homeobox domain, Homeobox KN domain) |
| Binding Sites: | AACTGTCA AATGACAG ACTGACAG AGCTGTCA AGTGACAG ATGACAGC ATGACAGG ATTGACAG CCTGTCAA CCTGTCAC CCTGTCAG CTGACAGC CTGTCAAA CTGTCAAC CTGTCACA CTGTCACC GCCTGTCA GCTGTCAA GCTGTCAC GGCTGTCA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
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