Transcription Factor
| Accessions: | T17134 (AthalianaCistrome v4_May2016), O23160 (JASPAR 2024) |
| Names: | AT4G37260, MYB73, T17134;, AtMYB73, Myb-related protein 73, MYB73_ARATH, Transcription factor MYB73 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:MYB |
| Length: | 320 |
| Pfam Domains: | 13-58 Myb-like DNA-binding domain 16-74 Myb-like DNA-binding domain 67-109 Myb-like DNA-binding domain 68-115 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MSNPTRKNMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS 60 61 PEVEHRAFSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRKCSVEGQS 120 121 CDFGGNGGYDGNLGEEQPLKRTASGGGGVSTGLYMSPGSPSGSDVSEQSSGGAHVFKPTV 180 181 RSEVTASSSGEDPPTYLSLSLPWTDETVRVNEPVQLNQNTVMDGGYTAELFPVRKEEQVE 240 241 VEEEEAKGISGGFGGEFMTVVQEMIRTEVRSYMADLQRGNVGGSSSGGGGGGSCMPQSVN 300 301 SRRVGFREFIVNQIGIGKME |
| Interface Residues: | 13, 47, 48, 49, 50, 52, 53, 56, 57, 58, 99, 100, 103, 104, 107, 108, 109 |
| 3D-footprint Homologues: | 3osg_A, 1vfc_A, 2kdz_A, 7xur_A, 1w0t_A, 5eyb_B, 6kks_A, 1mse_C, 7c4r_A, 3zqc_A |
| Binding Motifs: | M0509 TAACbGwawww MA1394.2 whAACGGTcAww MA1394.3 AACGGTcA |
| Binding Sites: | MA1394.3.3 MA1394.3.10 / MA1394.3.15 / MA1394.3.16 / MA1394.3.17 / MA1394.3.2 / MA1394.3.6 MA1394.3.1 / MA1394.3.20 MA1394.3.19 / MA1394.3.5 MA1394.2.1 MA1394.2.10 / MA1394.2.4 MA1394.2.11 MA1394.2.12 / MA1394.2.5 MA1394.2.13 / MA1394.2.6 MA1394.2.14 MA1394.2.15 MA1394.2.16 MA1394.2.17 MA1394.2.18 / MA1394.2.7 MA1394.2.19 / MA1394.2.8 MA1394.2.2 MA1394.2.20 / MA1394.2.9 MA1394.2.3 MA1394.2.4 MA1394.2.1 / MA1394.2.5 MA1394.2.2 / MA1394.2.6 MA1394.2.7 MA1394.2.8 MA1394.2.3 / MA1394.2.9 MA1394.2.10 MA1394.2.11 MA1394.2.12 MA1394.2.13 MA1394.2.14 MA1394.2.15 / MA1394.2.16 MA1394.2.17 MA1394.2.18 MA1394.2.19 MA1394.2.20 MA1394.3.11 / MA1394.3.8 MA1394.3.12 / MA1394.3.13 / MA1394.3.14 / MA1394.3.7 / MA1394.3.9 MA1394.3.18 MA1394.3.4 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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