DNA Binding Site
| Accessions: | CTGACAGC (UniPROBE 20160601), MA1693.2.4 (JASPAR 2024), MA1693.2.5 (JASPAR 2024) |
| Organisms: | Mus musculus, Zea mays |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CTGACAGC |
| Type: | Heterodimer |
| Binding TFs: | UP00122A (Homeobox domain, Homeobox KN domain) UP00186A (Homeobox domain, Homeobox KN domain) UP00203A (Homeobox domain, Homeobox KN domain) UP00205A (Homeobox domain, Homeobox KN domain) UP00210A (Homeobox domain, Homeobox KN domain) UP00258A (Homeobox domain, Homeobox KN domain) A0A060D7X7 (AUX/IAA family, B3 DNA binding domain, Auxin response factor) A0A060D7X7 |
| Binding Motifs: | UP00122A_1 dakwwTGACAGCTsskw UP00186A_1 wasbAsCTGTCAWwac UP00203A_1 wrmsAsCTGTCAawmc UP00205A_1 aarsrsCTGTCAathy UP00210A_1 wadbAsCTGTCAwwmc UP00258A_1 aacyAGCTGTCAAwmc MA1693.2 CAGACAGC |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
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