Transcription Factor
| Accessions: | A0A060D7X7 (JASPAR 2024), AuxinResponseFactor34 (EEADannot 2023-12-22) |
| Names: | A0A060D7X7_MAIZE, Auxin response factor, Fragment, ARF34, GRMZM2G081158 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1, EEADannot 2023-12-22 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:ARF |
| Length: | 897 |
| Pfam Domains: | 129-230 B3 DNA binding domain 255-338 Auxin response factor 760-852 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MNLSPPKMSEPSPESDGEQRCLNSELWHACAGPLVSLPVVGSRVVYFPQGHSEQVAASTN 60 61 KEVDAQIPNYPNLPPQLICQLHNVTMHADAETEEVYAQMTLQPLSPEEQKDPFLPIELGA 120 121 GSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPVQELVARDLHDNEWK 180 181 FRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIFIWNDNNQLLLGIRRASRPQTVMPSS 240 241 VLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRF 300 301 RMLFETEESSVRRYMGTITGISDLDSERWPNSHWRSVKVGWDESTAGDKQPRVSLWEIEP 360 361 LTTFPMYPTAFPLRLKRPWASGLPMFNGGRSDEFARYSSLMWLRDGNRGAQSLNFQGLGA 420 421 SPWLQPRIDYPLLSLKPDTYQQMAAAALEEIRAGDHLKQASSLLPVQQTQTLNGGLDHLY 480 481 GNPVLQQMQFQSQQSTLQAVQQGYGQNANDSGYVQNQLQQLQLQKQQEPPPPQQQQQTQV 540 541 LQRQAHQEMQQHLSASCHDIANVASGVSMSGSACQSQSSLLSGSSFYQQNIFDGNGGPDL 600 601 HLHNSFHNFSSQESSNLLNLPRSGQLMASEGWPSKRLAVESLAGHEIQPLQHKLEKVSHQ 660 661 STVSHCSGTLPPLSARDGSSAQACGTNVQSHLLPSSFAIHDGLSTIRSGGVGSGTDAITI 720 721 ASLRYSDANLLPENSIATSSCLGESGTFNSLDDVCGVNPSQGGTFVKVYKSGSLGRSLDI 780 781 TRFGSYYELRVELERLFGLEGQLEDPARSGWQLVFVDRENDVLLLGDDPWQEFVNSVGCI 840 841 KILSPQDLQQMARGGGGDLLSAPGARMLQGSVCDDYSAGHDVQNLTGSIAPVVPLDY |
| Interface Residues: | 134, 136, 141, 142, 143, 145, 184, 186, 187, 188, 189, 190, 191, 192 |
| 3D-footprint Homologues: | 6j9b_A, 6sdg_B, 6ycq_A, 6fas_B, 7et6_A |
| Binding Motifs: | MA1693.1 rrCAGACAGCmrg EEAD0036 aGACA EEAD0037 rrACAtsaTGTyy MA1693.2 CAGACAGC |
| Binding Sites: | MA1693.2.4 / MA1693.2.5 MA1693.1.1 MA1693.1.10 MA1693.1.11 / MA1693.1.8 MA1693.1.12 MA1693.1.13 / MA1693.1.9 MA1693.1.14 MA1693.1.10 / MA1693.1.15 MA1693.1.11 / MA1693.1.16 MA1693.1.17 MA1693.1.12 / MA1693.1.18 MA1693.1.19 MA1693.1.1 / MA1693.1.2 MA1693.1.13 / MA1693.1.20 MA1693.1.2 / MA1693.1.3 MA1693.1.3 / MA1693.1.4 MA1693.1.4 / MA1693.1.5 MA1693.1.5 / MA1693.1.6 MA1693.1.6 / MA1693.1.7 MA1693.1.7 / MA1693.1.8 MA1693.1.9 MA1693.1.14 MA1693.1.15 MA1693.1.16 MA1693.1.17 MA1693.1.18 MA1693.1.19 MA1693.1.20 MA1693.2.1 / MA1693.2.12 MA1693.2.10 / MA1693.2.7 MA1693.2.11 / MA1693.2.13 MA1693.2.14 MA1693.2.15 / MA1693.2.16 MA1693.2.17 MA1693.2.18 / MA1693.2.19 MA1693.2.2 MA1693.2.20 MA1693.2.3 MA1693.2.6 / MA1693.2.9 MA1693.2.8 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.