DNA Binding Site
| Accessions: | ATGATATC (UniPROBE 20160601), MA1212.2.18 (JASPAR 2024) |
| Organisms: | Mus musculus, Homo sapiens, Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | ATGATATC |
| Type: | Heterodimer |
| Binding TFs: | UP00008A / UP00388A (Homeobox domain, Homeobox KN domain) UP00159A (Homeobox domain, Homeobox KN domain) UP00192A (Homeobox domain, Homeobox KN domain) UP00195A (Homeobox domain, Homeobox KN domain) UP00199A (Homeobox domain, Homeobox KN domain) Q8LC03 (Homeobox domain, Homeobox associated leucine zipper) UP00620B (Homeobox domain, Homeobox KN domain) Q8LC03 |
| Binding Motifs: | UP00008A_1 rwwrGGGTATCAhwtwt UP00159A_1 rakrGGGTATCAcdwyt UP00192A_1 ratrGGGTATCAykwbt UP00195A_1 rAtrGGGTATCAywwwt UP00199A_1 atrmaTGACACCthybr UP00388A_1 datrGGGTATCAhwwwt UP00008A_2 mwbskATATATmcryyt UP00388A_2 rwwrGGGTATCAwtwyt UP00620B_2 rwrrwdrrgRTATCAhtyrtkm MA1212.2 yAATAATT |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed] |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.