Transcription Factor
| Accessions: | Q8LC03 (JASPAR 2024), T03131 (AthalianaCistrome v4_May2016) |
| Names: | ATB13_ARATH, HD-ZIP protein ATHB-13, Homeobox-leucine zipper protein ATHB-13, Homeodomain transcription factor ATHB-13, AT1G69780, ATHB13, T03131; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:Homeobox |
| Length: | 294 |
| Pfam Domains: | 85-138 Homeobox domain 140-184 Homeobox associated leucine zipper |
| Sequence: (in bold interface residues) | 1 MSCNNGMSFFPSNFMIQTSYEDDHPHQSPSLAPLLPSCSLPQDLHGFASFLGKRSPMEGC 60 61 CDLETGNNMNGEEDYSDDGSQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG 120 121 LQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMGLKNR 180 181 EQTESINLNKETEGSCSNRSDNSSDNLRLDISTAPPSNDSTLTGGHPPPPQTVGRHFFPP 240 241 SPATATTTTTTMQFFQNSSSGQSMVKEENSISNMFCAMDDHSGFWPWLDQQQYN |
| Interface Residues: | 84, 85, 86, 87, 88, 124, 125, 127, 128, 131, 132, 135, 136, 138, 139 |
| 3D-footprint Homologues: | 2lkx_A, 3cmy_A, 1puf_B, 2ld5_A, 1nk2_P, 1b72_A, 6a8r_A, 3rkq_B, 1au7_A, 5hod_A, 5jlw_D, 1e3o_C, 7q3o_C, 1le8_A, 1ig7_A, 4qtr_D, 1puf_A, 1du0_A, 7psx_B, 3lnq_A, 2hdd_A, 1jgg_B, 6es3_K, 4xrs_G, 2r5y_A, 5zfz_A, 5flv_I, 3a01_E, 1zq3_P, 1fjl_B, 5zjt_E, 4cyc_A, 6wig_A, 2h1k_B, 2hos_A, 6m3d_C |
| Binding Motifs: | M0426 / MA1212.1 tyAATAATTrw M0439 tyAATAATTra MA1212.2 yAATAATT |
| Binding Sites: | MA1212.2.14 MA1212.2.18 MA1212.2.6 MA1212.1.3 MA1212.1.7 MA1212.1.4 MA1212.1.5 MA1212.1.1 MA1212.1.2 MA1212.1.10 MA1212.1.11 MA1212.1.12 MA1212.1.13 MA1212.1.14 MA1212.1.15 MA1212.1.16 MA1212.1.17 MA1212.1.18 MA1212.1.19 MA1212.1.20 MA1212.1.6 MA1212.1.8 MA1212.1.9 MA1212.2.7 MA1212.2.1 MA1212.2.10 MA1212.2.11 MA1212.2.12 MA1212.2.13 MA1212.2.15 MA1212.2.16 MA1212.2.17 MA1212.2.19 MA1212.2.2 MA1212.2.20 MA1212.2.3 MA1212.2.4 MA1212.2.5 MA1212.2.8 MA1212.2.9 |
| Publications: | Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.