DNA Binding Motif
| Accessions: | UP00159A_1 (UniPROBE 20160601) |
| Names: | Homeobox protein SIX2, Sine oculis homeobox homolog 2, sine oculis-related homeobox 2 homolog (Drosophila), Six2 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | rakrGGGTATCAcdwyt |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.45 0.10 0.29 0.16 r 02 0.59 0.12 0.09 0.21 a 03 0.19 0.04 0.26 0.51 k 04 0.30 0.11 0.52 0.07 r 05 0.12 0.04 0.80 0.04 G 06 0.01 0.03 0.92 0.04 G 07 0.13 0 0.87 0 G 08 0 0 0.05 0.95 T 09 0.96 0 0.04 0 A 10 0 0 0 0.99 T 11 0.01 0.98 0 0.01 C 12 0.90 0.02 0.05 0.02 A 13 0.17 0.51 0.08 0.25 c 14 0.25 0.17 0.29 0.29 d 15 0.34 0.08 0.06 0.52 w 16 0.23 0.27 0.22 0.28 y 17 0.17 0.08 0.22 0.52 t |
| Binding TFs: | UP00159A (Homeobox domain, Homeobox KN domain) |
| Binding Sites: | AATGATAC ACGTATCA AGGGTATC AGGTATCA AGTGATAC ATGATACC ATGATACG ATGATATC CGATACCC CGGTATCA GATACCCC GATATCAC GATATCCC GATGATAC GGATATCA GGTATCAA GGTATCAC TGATACCA TGATATCA GGTGATAC |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.