DNA Binding Motif

						

			
Accessions: UP00397A_1 (UniPROBE 20160601)

			
Names: Cbf1, CBP-1, Centromere promoter factor 1, Centromere-binding factor 1, Centromere-binding protein 1, CEP1, CP1, CPF1, J1730, YJR060W
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: wswaywsrTCACGTGmtcdgmy
Weblogo: 
PSSM: P0      A      C      G      T
01   0.25   0.10   0.13   0.52      w
02   0.23   0.32   0.27   0.19      s
03   0.37   0.15   0.15   0.33      w
04   0.34   0.18   0.24   0.23      a
05   0.19   0.41   0.15   0.25      y
06   0.37   0.21   0.09   0.32      w
07   0.16   0.32   0.35   0.16      s
08   0.39   0.04   0.55   0.02      r
09   0.16   0.05   0.10   0.70      T
10   0.01   0.99      0      0      C
11   0.98   0.01      0      0      A
12      0   0.98   0.01   0.02      C
13   0.05   0.01   0.94      0      G
14   0.01      0   0.01   0.98      T
15      0      0   0.97   0.02      G
16   0.44   0.26   0.09   0.22      m
17   0.11   0.18   0.06   0.65      t
18   0.09   0.55   0.13   0.23      c
19   0.28   0.13   0.25   0.34      d
20   0.22   0.20   0.44   0.14      g
21   0.37   0.31   0.19   0.13      m
22   0.23   0.32   0.12   0.34      y
Binding TFs: UP00397A (Helix-loop-helix DNA-binding domain)
Binding Sites: AACACGTG
ACACGTGA
ACACGTGC
ACACGTGG
ACACGTGT
ACCACGTG
AGCACGTG
ATCACGTG
CACGTGAC
CACGTGAG
CACGTGCA
CACGTGCC
CACGTGCG
CACGTGGC
CACGTGTA
CACGTGTC
CCACGTGA
GCACGTGA
GCACGTGC
TCACGTGA
			
Publications: Berger M.F, Philippakis A.A, Qureshi A.M, He F.S, Estep P.W, Bulyk M.L. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nature biotechnology 24:1429-35 (2006). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.