DNA Binding Motif

Accessions: UP00397A_1 (UniPROBE 20160601)
Names: Cbf1, CBP-1, Centromere promoter factor 1, Centromere-binding factor 1, Centromere-binding protein 1, CEP1, CP1, CPF1, J1730, YJR060W
Organisms: Saccharomyces cerevisiae
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 22
Consensus: wswaywsrTCACGTGmtcdgmy
Weblogo:
PSSM: P0 A C G T
01 0.25 0.10 0.13 0.52 w
02 0.23 0.32 0.27 0.19 s
03 0.37 0.15 0.15 0.33 w
04 0.34 0.18 0.24 0.23 a
05 0.19 0.41 0.15 0.25 y
06 0.37 0.21 0.09 0.32 w
07 0.16 0.32 0.35 0.16 s
08 0.39 0.04 0.55 0.02 r
09 0.16 0.05 0.10 0.70 T
10 0.01 0.99 0 0 C
11 0.98 0.01 0 0 A
12 0 0.98 0.01 0.02 C
13 0.05 0.01 0.94 0 G
14 0.01 0 0.01 0.98 T
15 0 0 0.97 0.02 G
16 0.44 0.26 0.09 0.22 m
17 0.11 0.18 0.06 0.65 t
18 0.09 0.55 0.13 0.23 c
19 0.28 0.13 0.25 0.34 d
20 0.22 0.20 0.44 0.14 g
21 0.37 0.31 0.19 0.13 m
22 0.23 0.32 0.12 0.34 y
Binding TFs: UP00397A (Helix-loop-helix DNA-binding domain)
Binding Sites: AACACGTG
ACACGTGA
ACACGTGC
ACACGTGG
ACACGTGT
ACCACGTG
AGCACGTG
ATCACGTG
CACGTGAC
CACGTGAG
CACGTGCA
CACGTGCC
CACGTGCG
CACGTGGC
CACGTGTA
CACGTGTC
CCACGTGA
GCACGTGA
GCACGTGC
TCACGTGA
Publications: Berger M.F, Philippakis A.A, Qureshi A.M, He F.S, Estep P.W, Bulyk M.L. Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities. Nature biotechnology 24:1429-35 (2006). [Pubmed]

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