DNA Binding Site

						

			
Accessions: ACACGTGA (UniPROBE 20160601), MA0964.3.14 (JASPAR 2024), MA0964.3.18 (JASPAR 2024), MA1449.2.1 (JASPAR 2024), MA2301.1.14 (JASPAR 2024)

			
Organisms: Mus musculus, Saccharomyces cerevisiae, Caenorhabditis elegans, Arabidopsis thaliana, Drosophila melanogaster
Libraries: UniPROBE 20160601 1, JASPAR 2024 2
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 8
Sequence: ACACGTGA
Type: Heterodimer
Binding TFs: UP00324A (Helix-loop-helix DNA-binding domain)
UP00309A / UP00397A (Helix-loop-helix DNA-binding domain)
UP00365A (Helix-loop-helix DNA-binding domain)
UP00379A (Helix-loop-helix DNA-binding domain)
UP00050A (Helix-loop-helix DNA-binding domain)
UP00548B (Helix-loop-helix DNA-binding domain)
Q9LEZ3 (Helix-loop-helix DNA-binding domain)
H2KZZ2 (Helix-loop-helix DNA-binding domain)
H2KZZ2
O61735
Q9LEZ3
Binding Motifs: UP00050A_1 rrawkrgTCACGTGAsymrywy
UP00309A_1 kaycwgkCACGTGactbvymg
UP00324A_1 gwkgmrTCACGTGAygmmbw
UP00365A_1 wswaTCACGTGAywawy
UP00379A_1 ybtrvarwaaarwg
UP00397A_1 wswaywsrTCACGTGmtcdgmy
UP00050A_2 ygysryTmCACGTGGArrsmrgt
UP00548B_1 sGgamrGrCACGTGtCsyhCysy
MA0964.3 TCACGTGA
MA1449.2 TCACGTGA
MA2301.1 tCACGTGa
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]


Yin Y, Vafeados D, Tao Y, Yoshida S, Asami T, Chory J. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell 120:249-59 (2005). [Pubmed]


Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed]


Zhu LJ, Christensen RG, Kazemian M, Hull CJ, Enuameh MS, Basciotta MD, Brasefield JA, Zhu C, Asriyan Y, Lapointe DS, Sinha S, Wolfe SA, Brodsky MH. FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system. Nucleic Acids Res : (2011). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.